PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000542351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 91aa    MW: 9980.79 Da    PI: 10.9283
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000542351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.22.3e-13640135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C++Cgt kT++WR gp gnktL  aC  +yrk g+
  MDP0000542351  6 CQHCGTEKTSQWRPGPHGNKTLXXACXXRYRKSGK 40
                   ********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.723155IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-7251IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-10344IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.52E-10360No hitNo description
CDDcd002021.13E-8555No hitNo description
PfamPF003204.0E-11640IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MIGRKCQHCG TEKTSQWRPG PHGNKTLXXA CXXRYRKSGK LVPEYXPASS PTFSRELHLN  60
RLSKTLRGGE VVAQRDXTTG GGDEGRSGRK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097024.15e-23GATA transcription factor 1
SwissprotQ8LAU92e-23GATA1_ARATH; GATA transcription factor 1
TrEMBLW9R3B36e-23W9R3B3_9R
STRINGAT3G24050.16e-21(Arabidopsis thaliana)
STRINGSi039011m8e-21(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-24GATA transcription factor 1